AT1G50280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Phototropic-responsive NPH3 family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Phototropic-responsive NPH3 family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: response to light stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot, leaf lamina base, leaf whorl, leaf; EXPRESSED DURING: LP.04 four leaves visible, LP.02 two leaves visible, 4 leaf senescence stage; CONTAINS InterPro DOMAIN/s: NPH3 (InterPro:IPR004249), BTB/POZ fold (InterPro:IPR011333); BEST Arabidopsis thaliana protein match is: Phototropic-responsive NPH3 family protein (TAIR:AT3G19850.1); Has 794 Blast hits to 779 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 789; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:18623857..18626292 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 60037.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.97 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 525 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSPLNDLKIN LNGQYTFFLN QNVISKYSGS LRKMIKQSKK KRNKKKRIIT IEINDFPGGP DGFELVSRFC YHNGEILIDV SNVSTLYCCS VFLGMSEKFC 101: FSNLFLQTEK FLEEVFYGSW SDIVSCLKNC EQVFFQADSY GLVDKLIFAA LNKISQNSDD FSSSSLSSFA SSLSPEMAKN TSESDGRYIS RSVACGRSNE 201: WWFEDMTNLS PKIILKLVMI IGAYKTNIKS LVLTRFLLHY LKTKLQTKSR TTTELMRNKL EYSDLADTAV RGVISAGTRT FSCRKLFWIL RVLSSFSLSR 301: ESRIGLETLI GEMLEQATLD DLLISARGSR ESGFYNVDLV IRLLKVFVKN REEEEEESRE RNMKEIGKLI DKYLREISPD QNLKVPKFLG VAESLPDSAR 401: DCFDGVYRAI DIYLQSHPNL TPQDRTEICR CLNYKKLTME TCKQLARNPK IPPEIAIEAL KSRCGNQEHT TSDVKVANKS FSCRYSEEKK KPVVLHLEIT 501: EKLAERLKTK GGYNLKVMDS FREGL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)