AT1G50000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.846 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : methyltransferases | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
methyltransferases; FUNCTIONS IN: methyltransferase activity; INVOLVED IN: rRNA processing; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Ribosomal RNA small subunit methyltransferase E (InterPro:IPR006700); Has 5958 Blast hits to 5958 proteins in 2191 species: Archae - 0; Bacteria - 4231; Metazoa - 2; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 1691 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:18515183..18517244 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32335.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.00 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||
| Length | 296 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMRALAAASR PLFSDLPSLV RSWLPTSSFK SFATVSSSPP SDLNLRNQSR GGLPRFFSDD LPSRKGGVVR VQGSEFWHMA KVLRLKQEDR VELFNGKGGL 101: VEGCIQSIDK TGVDFIAQED QKVILPQGMQ WQVFAAFGTL KGGRADWLIE KCTELGASSV TPLLTERSPI ISENRVDRLE RVSFAAAKQC QRLHQMVLNP 201: PIKFGTLLDH ILKSKLCLVA TAEAKPLLNA VNSSAKESSG LLIVGPEGDF TKKEVEMMLE AGGTAVGLGP HRLRVETATI ALLATLVMWS DSQEMI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)