AT1G49900.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : C2H2 type zinc finger transcription factor family | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
C2H2 type zinc finger transcription factor family; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc-finger protein 2 (TAIR:AT3G19580.2); Has 13177 Blast hits to 8629 proteins in 489 species: Archae - 12; Bacteria - 972; Metazoa - 5177; Fungi - 1539; Plants - 2420; Viruses - 128; Other Eukaryotes - 2929 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:18474108..18477643 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 102704.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.78 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.92 | ||||||||||||||||||||||||||||||||||||
| Length | 917 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLKTLNQFS PLTKLTVPNH RDVQVRTDQL ITYERSKRKS SLHDDEDLIS KRRCLDFQRK IEDNECANDG VFVAPPRFKS GQVSIRQRSD APLSSQAVKH 101: DEFANDAFYK PWLDSFRLKR QRLGDDEDPS SSSSPSEVDI AALTLLQFSC DRRHPQTQTL TRPQPQTHKT QLQRPPPQLQ SQTQTAPPKS DLFKCSICEK 201: VFTSYQALGG HKASHSIKAA QLENAGADAG EKTRSKMLSP SGKIHKCDIC HVLFPTGQAL GGHKRRHYEG LLGGHKRGND EAVLKLSPNS NKSVVTKVLD 301: AEQSLRASDN IHKRNQDEVV PSRDKWSLSN VSVVKNVLDL KLSLGESDGG HKDSQDEVVV HEDKCSPSSN GSIVTNVSDP EQSVRRLIDL NNPPSLEFDQ 401: SRGGDVEEVE KEVVLALSSQ MKQPSKDVSA LIKRLEFAMQ ERKDGLLADD NVLIEMIMEL EGNISTTNGD DEDPYSEGRL IKVIEPIGLD EDDECVEIGL 501: GSCEQEPIQE RFGDDKDPSS DHGNVESIRL EEEDAVLFEP WLKSRLKSRD REQSQRQGFG EYEDCFSERR FLQEEEEECF GDDEDSFSDQ ISFLESNRLE 601: EEFEEEKEAA RFSNDNDFVE LLFQGIEQSK SKPKPKSCSY YDDDDDDDDD GDEDDDDDDD DVDPSSKDIR LEEENECENR AVIRPSLNSV APNQQRFGDD 701: EVPSSSSSLS KDETAALCPT PHSQTQPQSQ TQLQKVTQPQ TQMLPKSDSY QCNVCGRELP SYQALGGHKA SHRTKPPVEN ATGEKMRPKK LAPSGKIHKC 801: SICHREFSTG QSLGGHKRLH YEGVLRGHKR SQEKEAVSQG DKLSPSGNGS VVTHVPDPKQ SRKGLIVINK VPSPEFNDPG DKDILEGESA LLANKLEQDR 901: GITSTRMING LKFFNFL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)