AT1G49870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 6518 Blast hits to 5022 proteins in 522 species: Archae - 49; Bacteria - 635; Metazoa - 3264; Fungi - 379; Plants - 242; Viruses - 9; Other Eukaryotes - 1940 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:18460345..18463557 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 92784.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.10 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.87 | ||||||||||||||||||||||||
| Length | 828 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIKAAMDLGC LDLGCLSDKK SGVGVSDHLE CSSSPSKLGK NKSPRETSAL RKSQSKRSSQ RKTSPLGWFP RRKGDSYLNR KIKKLQEVGG MNQTLDETLG 101: DSNPHYCKIV REQMAVREAA GKAMELRKAA LVEASWCRIL RAARIPCLEA ETLMENAEKA AVEAFEAASA LGVIMHDKPN SSRKQYRIET SGTHGRGSPT 201: HTVTASFETA FDVDKEVAAA VKTAFARLAN CPSFSKAEIK DLLKKISENP DVRDNHEITE MSSECDTESD SELGILHKVD EEVAECEETS YFKMRQLKVK 301: RRQSFGKFSR EKLVELMLER LQGLHEDQLS SLASVVATCG LNEALAEVSS QRGQTTSFEP IVSDTRSRRD SKFGSLMEGK TTRDGTETEI PSLDKYLVKH 401: MTKLEREVHE AKRVSKEVSE KNKKVPQGVA SDPVPDLGSI LVKHSSRLEK EIEEAKKNAG VSFGKYQKTS SRNKTPLDPI PDLESLLVKK HVSGLEKEVQ 501: ETIKNCGKMY ENVKKPGRKD GLSEVPSLDS CLVKHFSKLE KEVQEAKKRS KEDLEARNLE TVSSVLLTEE LGKENVDSNN NKAEGQEESL DMILVKPVHR 601: LETEKIASEA VYGNRRIQKR KQGAKTESNY ESLDKILVKH VPKLEKEKQM FKAGVEETEN SKRNNEGSLN QGHESMKVAK PILSRRQMRD KEIQETWGGL 701: GLGESKNNNQ KKPESKKTEA TENLGEETRP VLTRRQERDR EMLEAWGGLG LGDSTSYQPV NKNKRKPESE KMETATPLLT RRQARDREMQ EAWGGLDLGN 801: SIRPSLSKLE REKAAWIKAE KEETTRGN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)