AT1G49810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.428 extracellular 0.397 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Na+/H+ antiporter 2 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of Na+/H+ antiporter-Putative family | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Na+/H+ antiporter 2 (NHD2); FUNCTIONS IN: potassium:hydrogen antiporter activity, sodium:hydrogen antiporter activity; INVOLVED IN: sodium ion transport; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Na+/H+ antiporter NhaD-like (InterPro:IPR018390), Divalent ion symporter (InterPro:IPR004680); BEST Arabidopsis thaliana protein match is: sodium:hydrogen antiporter 1 (TAIR:AT3G19490.1); Has 2599 Blast hits to 2589 proteins in 759 species: Archae - 70; Bacteria - 1706; Metazoa - 106; Fungi - 60; Plants - 74; Viruses - 0; Other Eukaryotes - 583 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:18440013..18442237 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45449.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.68 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.82 | ||||||||||||||||||||||||||||||||
| Length | 420 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALLFGIGYV LIIFEESLSF SKSGIALLMA VSLWVVRSIE TSVEIVTLEL QHATSEVSQI VFYMLGAMTI VEIIDAHQGF KLVTDCITSR KPKILLWVIG 101: FATFFLSSVL DNLTSTIVMV SLLRRLIPPS EYRKLLGAVV VIAANAGGAW TPIGDVTTTM LWIHGHISTF STIKNLFLPS AISLVVPLAL MSLTSEVHGM 201: GLNTPPTPLL AYDRSAPRGK LVFGVGFGAL LFVPLFKSLT GLPPYMGILL GLGVIWILTD VIHYGDLERQ HLKLPHALSR IDSQGALFFL GILLSMSSLD 301: AAGILKVIAN YLDAHIANVE LIASIIGVVS AIIDNVPLVA ATMGMYDLST FPQDSEFWQL ISFCAGTGGS MLITGSAAGV IFMSMEKVNF FWYFRKVSGF 401: AFAGFTAGIM TYLAVHNFPL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)