AT1G49190.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||
| Description (TAIR10) | protein_coding : response regulator 19 | ||||||||||||
| Curator Summary (TAIR10) |
member of Response Regulator: B- Type | ||||||||||||
| Computational Description (TAIR10) |
response regulator 19 (RR19); CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Signal transduction response regulator, receiver domain (InterPro:IPR001789), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: response regulator 20 (TAIR:AT3G62670.1); Has 45111 Blast hits to 44660 proteins in 2702 species: Archae - 154; Bacteria - 38880; Metazoa - 15; Fungi - 96; Plants - 2828; Viruses - 0; Other Eukaryotes - 3138 (source: NCBI BLink). | ||||||||||||
| Protein Annotations |
|
||||||||||||
| Coordinates (TAIR10) | chr1:+:18191342..18193598 | ||||||||||||
| Molecular Weight (calculated) | 69252.80 Da | ||||||||||||
| IEP (calculated) | 4.79 | ||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||
| Length | 608 amino acids | ||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLVGKISGYE DNTRSLERET SEITSLLSQF PGNTNVLVVD TNFTTLLNMK QIMKQYAYQV SIETDAEKAL AFLTSCKHEI NIVIWDFHMP GIDGLQALKS 101: ITSKLDLPVV IMSDDNQTES VMKATFYGAC DYVVKPVKEE VMANIWQHIV RKRLIFKPDV APPVQSDPAR SDRLDQVKAD FKIVEDEPII NETPLITWTE 201: EIQPVQSDLV QANKFDQVNG YSPIMNQDNM FNKAPPKPRM TWTEVIQPVQ SNLVQTKEFG QLNDYSQIMN QDSMYNKAAT KPQLTWTEEI QPVQSGLVQA 301: NEFSKVNGYS QSMNQDSMFN KSATNPRLTW NELLQPVQSD LVQSNEFSQF SDYSQIMNED NMFNKAAKKP RMTWSEVFQP VQSHLVPTDG LDRDHFDSIT 401: INGGNGIQNM EKKQGKKPRK PRMTWTEELH QKFLEAIEII GANPKVLVEC LQEMRIEGIT RSNVASHLQK HRINLEENQI PQQTQGNGWA TAYGTLAPSL 501: QGSDNVNTTI PSYLMNGPAT LNQIQQNQYQ NGFLTMNNNQ IITNPPPPLP YLDHHHQQQH QSSPQFNYLM NNEELLQASG LSATDLELTY PSLPYDPQEY 601: LINGYNYN |
||||||||||||
| See Also |
|
||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)