AT1G49015.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DPP6 N-terminal domain-like protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DPP6 N-terminal domain-like protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), Translation initiation factor eIF-3b (InterPro:IPR011400); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3B-2 (TAIR:AT5G25780.1); Has 427 Blast hits to 427 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 167; Plants - 63; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:18134528..18135312 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 25305.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.47 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||
| Length | 227 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGVDGHVVD NSWPIIRWAG GKDDKYFATL IKNTTATQEG AAVNFDDVVG MSWSPTEPIL SLLKGDVKNQ PKKVVFLQIP GYVELMHKDI LSVSDCKMYW 101: QSKGKYLAVQ VTRHTCSLFE LFRFNKVQGI TTEALEVDEK ILAFAWEPSG HRFAVIHGDQ SKPNVSFYSM ETPQNPGKVS KLATFDDKEA DALFWSPRGK 201: HIVLAGLKAA SMAISSFSTW ISLRCSR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)