AT1G48860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta; FUNCTIONS IN: 3-phosphoshikimate 1-carboxyvinyltransferase activity, catalytic activity, transferase activity, transferring alkyl or aryl (other than methyl) groups; INVOLVED IN: glyphosate metabolic process, aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: 3-phosphoshikimate 1-carboxyvinyltransferase, core (InterPro:IPR001986), 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup (InterPro:IPR006264), RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (InterPro:IPR013792); BEST Arabidopsis thaliana protein match is: RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta (TAIR:AT2G45300.1); Has 13571 Blast hits to 13566 proteins in 2755 species: Archae - 215; Bacteria - 9443; Metazoa - 6; Fungi - 149; Plants - 219; Viruses - 0; Other Eukaryotes - 3539 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:18068892..18071331 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 55834.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.77 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.02 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 521 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MASSLTSKSI LGCTKPASSS FLPSELRRLS SPAVQISLHS QTRKNFRQSW GLKKSDLMLN GSEIRPVKVR ASVSTAEKAS EIVLQPIREI SGLIKLPGSK 101: SLSNRILLLA ALSEGTTVVD NLLNSDDINY MLDALKILGL NVETHSENNR AVVEGCGGVF PASIDSKSDI ELYLGNAGTA MRPLTAAVTA AGGNASYVLD 201: GVPRMRERPI GDLVVGLKQL GADVECTLGT NCPPVRVNAN GGLPGGKVKL SGSISSQYLT ALLMAAPLAL GDVEIEIVDK LISVPYVEMT LKLMERFGVS 301: AEHSESWDRF FVKGGQKYKS PGNAYVEGDA SSASYFLAGA AITGETVTVE GCGTTSLQGD VKFAEVLEKM GCKVSWTENS VTVTGPSRDA FGMRHLRAID 401: VNMNKMPDVA MTLAVVALFA DGPTTIRDVA SWRVKETERM IAICTELRKL GATVEEGSDY CVITPPKKVK PAEIDTYDDH RMAMAFSLAA CADVPITIND 501: PGCTRKTFPD YFQVLERITK H |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)