AT1G48820.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.650 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Terpenoid cyclases/Protein prenyltransferases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; EXPRESSED IN: leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT1G48800.1); Has 1582 Blast hits to 1560 proteins in 171 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1578; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:18055229..18059367 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64880.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.15 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.33 | ||||||||||||||||||||||||||||||||
| Length | 561 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEAIRVFGLK LGSKLSIHSQ TNAFPAFKLS RFPLTSFPGK HAHLDPLKAT THPLAFDGEE NNREFKNLGP SEWGHQFLSA HVDLSEMDAL EREIEALKPK 101: VRDMLISSES SKKKILFLYL LVSLGLAYHF EDEIKESLED GLQKIEEMMA SEDDLRFKGD NGKFKECLAK DAKGILSLYE AAHMGTTTDY ILDEALSFTL 201: TYMESLAASG TCKINLSRRI RKALDQPQHK NMEIIVAMKY IQFYEEEEDC DKTLLKFAKL NFKFLQLHYL QELKILSKWY KDQDFKSKLP PYFRDRLVEC 301: HFASLTCFEP KYARARIFLS KIFTVQIFID DTCDRYASLG EVESLADTIE RWDPDDHAMD GLPDYLKSVV KFVFNTFQEF ERKCKRSLRI NLQVAKWVKA 401: GHLPSFDEYL DVAGLELAIS FTFAGILMGM ENVCKPEAYE WLKSRDKLVR GVITKVRLLN DIFGYEDDMR RGYVTNSINC YKKQYGVTEE EAIRKLHQIV 501: ADGEKMMNEE FLKPINVPYQ VPKVVILDTL RAANVSYEKD DEFTRPGEHL KNCITSIYFD L |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)