AT1G48780.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G18300.1); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:+:18041989..18042744 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 27371.10 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.27 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.73 | ||||||||||||||||||||||||
| Length | 251 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MICTEALQRI SFSSDLGQSD KAPPPVIEPS GLIRRDETLL DSSNSDFEFH ISNSFDPGDS SPADEIFADG MILPFHVTAA STVPKRLYKY ELPPITSSLS 101: PSPLSPQPLP TKHSEKETNG RASGANSDSE AEKSSKSFWS FKRSSSLNCD IKKSLICSFP RLTRSNSTGS VTNSKRAMLR DVNNHRPSSR SSCCNAYQFR 201: PQKHTGKKGE GGGSFSVIPV LNGPSTFGLG SILRHSNSKD KTKTKKKKNK K |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)