AT1G48670.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.997 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : auxin-responsive GH3 family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
auxin-responsive GH3 family protein; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT1G48660.1); Has 1327 Blast hits to 1306 proteins in 228 species: Archae - 0; Bacteria - 396; Metazoa - 53; Fungi - 2; Plants - 668; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:17998946..18001200 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59145.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.96 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||
| Length | 525 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMNPSLNLMD LEELTSNAKQ IQEDVLEEIL TLNANTEYLH RFLHGSSDKV LFKKNVPVVT YDDVKPYIER VANGEPSDVI SGGPITMFLR STGTSGGKQK 101: VFPVNDKYIE KLGYVIALRS LAMSKHFDSG GEQGKAMEFH CTKPPSATPS GLPRDEVVRV GAAFAFVLVR AIDFLEKHWK ELCSNIRSGH VSEWITDLEG 201: RNAVSTILRG PDSILADVIE QECSHKSWEG IITRLWPKAK YIDCIITGQM SQYIPMLEFY SNKLPIVSTT YGSSESTFGM NVDPLCKPQD TSYTCAPNIS 301: YFEFLPVDHK GDMASIVDLV DVKLGCYYEP VVTNYFGLHR YLIGDILQVT GFYNNTPQFR FVHRKNVVLS VRSETTTEED ILKALNHVGL VLESSDLMLM 401: GFTCYADIST FPGHYVFYWE LKAKDVQDVF ELEEKVMVKC CSLLEESFDE VYRKNRSKDE CIGPLEIRVV QQGTFDSLME YFISQGGSIA QYKTPICINS 501: SEALAVLENK VLARFFSEKS PPLDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)