AT1G48660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.841 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Auxin-responsive GH3 family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Auxin-responsive GH3 family protein; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: auxin-responsive GH3 family protein (TAIR:AT1G48670.1); Has 1415 Blast hits to 1338 proteins in 229 species: Archae - 0; Bacteria - 452; Metazoa - 52; Fungi - 2; Plants - 674; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:17995948..17997972 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 64128.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.76 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||
| Length | 573 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLSVELKDL EVLTTNAKQI QDDVLKEILT LNANTEYLKR FLDGSSDKEL FKKNVPVVSY NDVKPYIERV ANGEPSDVIS GGTITRFVQS TGTSGGIHKI 101: FPVNDKYIEN LGYLLAVSSL ITSNDKVDEK GKKMAFLYNR LESKTPSGLA LSSSFTSYFM SDYFKNRSSK CNSEYTSPDQ VILCPDNNQS VYCHLLCGLS 201: QREKVVGVSA TFAHALIKAI NALQIYWKEL SSNIRSGHVS EWITDLDCKN AVSAILGGPD PELADVIEQE CSHKSWEGII TRLWPKAKFI ECIVTGQMAQ 301: YIPTLDFYSN KLPIVSMVYG SSESIFGVNV DPLSKPQDVS YTFLPNISYF EFLPIDHEED MNTIVDLVGV KLGCYYETVV TSYFGLHRYL IGDILQVTGF 401: YNNTPQFRFV RRKNIVLSVN SEATTEQDIL KGLASATLVL ESSNSMLTGF TCYADISSFP GHYVFYWELK AKDVDDVVEL DENVLEECCY ALEESFDALY 501: KRLRSKEGSI GALEIKVVQQ GTFDSLMEYF ISKGGSVAQY KTPMCINSSE TLAVLEDKVI ARFYSQKSPP LNL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)