AT1G48640.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.995 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transmembrane amino acid transporter family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transmembrane amino acid transporter family protein; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: lysine histidine transporter 1 (TAIR:AT5G40780.1); Has 3833 Blast hits to 3828 proteins in 310 species: Archae - 3; Bacteria - 143; Metazoa - 982; Fungi - 592; Plants - 1638; Viruses - 0; Other Eukaryotes - 475 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:17986358..17988991 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 50452.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.86 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.61 | ||||||||||||||||||||||||||||||||||||
| Length | 453 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYIQMTDGVP PPPEQSSLDH RIDELERQKE IDDWLPITSS RNAKWWYSTF HNVTAMVGAG VLGLPFFMAQ LGWGPGIAVL ILSWIITLYT LWQMVEMHEM 101: VPGKRFDRYH ELGQFAFGER LGLYIIVPQQ IIVEVGVCIV YMVTGGQSLK KFHEIACQDC SPIRLSFFIM IFASSHFVLS HLPNFNSISG VSLVAAVMSL 201: SYSTIAWTAT AAKGVQEDVQ YGYKSGTTAS TVLSFFTGLG GIAFAYAGHN VVLEIQATIP STPSNPSKGP MWRGVVVAYV VVALCYFPVA LVGYGVFGNA 301: VLDNVLMSLE TPVWAIATAN LFVVMHVIGS YQIFAMPVFD MVETFLVKKL NFKPSTVLRF IVRNVYVALT MFIGIMIPFF GGLLAFFGGF AFAPTSYFLP 401: CIMWLLIYKP KRFSLSWWTN WVCIVLGVVL MILSSIGGLR QIIIQSKDYS FFS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)