AT1G48540.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.971 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Outer arm dynein light chain 1 protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Outer arm dynein light chain 1 protein; BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT3G17920.1); Has 8139 Blast hits to 5951 proteins in 446 species: Archae - 0; Bacteria - 3162; Metazoa - 3134; Fungi - 466; Plants - 504; Viruses - 10; Other Eukaryotes - 863 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:17945540..17950405 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 121033.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.80 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.42 | ||||||||||||||||||||||||||||||||
| Length | 1063 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MAIVTGDRYV EKLQKFLEDE AESLLEETMI LKLNPAGLHY LHLRLDSLRE LERMLSNAPV DYLRAYVSDL GDYRALEQLR RILRILTSLK VVSTLPSPAR 0101: DPTPLSLFPF GSLKVLELRR CDLSTSPAKG LIELRHTLEK IICHNSTDAL RHVFASRIAE ITNSPEWNKL AVISCACNRL VLMDESLQLL PAAESLDLSR 0201: NKFVKVDNLR RCTKLKHLDL GFNHLRTVSY LSQVSCHLVK LVLRNNALTT LRGIENLKSL QGLDVSYNII SNFSELEFLW SLSQLKELWL EGNPVCCARW 0301: YRAHVFSYVA LPDELKLDGK QIGTREFWKR QIIVAHRQSE PASYGFYSPA REEDNEEGSC NRKKKKICRL ASIHSEAEST YVNSDHESAT CDHENKENMK 0401: FNQEADIFGL ISKVEHLKKE RSVLWLREFK EWMDRSTEDF ADVCKDSQGI NLEKKYYTKI REISRHHGGG TPRYTSGSLR ASRAKSYRKN LECNGSCVDH 0501: KAGMDYMKYV EGNETQKITD DISSISLQST DRNQKHQECV HDEMESLSVE PNDLLPTTLA KEKLAENGNM STLDITQHMT GSTYPGSPPH YQKDVLYRRH 0601: NLVEEILQLS ADSYSVASSD STSSCSEDDN YDSESEYSNH KEGRLTDLLN VNRLGKEILE CTPKGTRFLG SQPENGSTIK TLRTDESMKE TTTNFPSGLH 0701: NGKHGVNQTD RLVEKRKPIK RFVSFQKEES CITNGEISLR SDADISDSGE DVCISDNFWE NTLSRVCSSS SNRSIKFLGT DRTLGVEEYF SAKLSVSSSQ 0801: ETCRTYMNCD LILQKGSTYK QREAVLLLSS QDKLYVLLVG VTTDYEGSTL SVLCSHEIKD LQDVSVGLGL QFVRLRFLED VEYIFVTKCI KKTTELLNIT 0901: QVFDSQATEY KCSLQSLENI QVDLFEKEIC GGLKLSIFQY NVLHFQSTTR GEVSWLLRSL FVAGRRLFIC SEDFTQLSSR TAYSSSAPYF LLDSCCSISE 1001: ISEMIIETQG IVVSLKIKEK RTVDLVTWKL KWCSIENAIK FAALLKALHP NSPQWPLAVR YRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)