AT1G48410.3
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Stabilizer of iron transporter SufD / Polynucleotidyl transferase | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes an RNA Slicer that selectively recruits microRNAs and siRNAs. There is currently no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex (RISC). Mutants are defective in post-transcriptional gene silencing and have pleiotropic developmental and morphological defects. Through its action on the regulation of ARF17 expression, the protein regulates genes involved at the cross talk between auxin and light signaling during adventitious root development. AGO1 seems to be targeted for degradation by silencing suppressor F-box-containing proteins from Turnip yellow virus and Cucurbit aphid-borne yellow virus. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ARGONAUTE 1 (AGO1); CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1785 (InterPro:IPR014811), Stem cell self-renewal protein Piwi (InterPro:IPR003165), Argonaute/Dicer protein, PAZ (InterPro:IPR003100), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Stabilizer of iron transporter SufD / Polynucleotidyl transferase (TAIR:AT5G43810.2). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:17886285..17891892 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 116467.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.68 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||||||
| Length | 1050 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVRKRRTDAP SEGGEGSGSR EAGPVSGGGR GSQRGGFQQG GGQHQGGRGY TPQPQQGGRG GRGYGQPPQQ QQQYGGPQEY QGRGRGGPPH QGGRGGYGGG 0101: RGGGPSSGPP QRQSVPELHQ ATSPTYQAVS SQPTLSEVSP TQVPEPTVLA QQFEQLSVEQ GAPSQAIQPI PSSSKAFKFP MRPGKGQSGK RCIVKANHFF 0201: AELPDKDLHH YDVTITPEVT SRGVNRAVMK QLVDNYRDSH LGSRLPAYDG RKSLYTAGPL PFNSKEFRIN LLDEEVGAGG QRREREFKVV IKLVARADLH 0301: HLGMFLEGKQ SDAPQEALQV LDIVLRELPT SRIRYIPVGR SFYSPDIGKK QSLGDGLESW RGFYQSIRPT QMGLSLNIDM SSTAFIEANP VIQFVCDLLN 0401: RDISSRPLSD ADRVKIKKAL RGVKVEVTHR GNMRRKYRIS GLTAVATREL TFPVDERNTQ KSVVEYFHET YGFRIQHTQL PCLQVGNSNR PNYLPMEVCK 0501: IVEGQRYSKR LNERQITALL KVTCQRPIDR EKDILQTVQL NDYAKDNYAQ EFGIKISTSL ASVEARILPP PWLKYHESGR EGTCLPQVGQ WNMMNKKMIN 0601: GGTVNNWICI NFSRQVQDNL ARTFCQELAQ MCYVSGMAFN PEPVLPPVSA RPEQVEKVLK TRYHDATSKL SQGKEIDLLI VILPDNNGSL YGDLKRICET 0701: ELGIVSQCCL TKHVFKMSKQ YMANVALKIN VKVGGRNTVL VDALSRRIPL VSDRPTIIFG ADVTHPHPGE DSSPSIAAVV ASQDWPEITK YAGLVCAQAH 0801: RQELIQDLFK EWKDPQKGVV TGGMIKELLI AFRRSTGHKP LRIIFYRDGV SEGQFYQVLL YELDAIRKAC ASLEAGYQPP VTFVVVQKRH HTRLFAQNHN 0901: DRHSVDRSGN ILPGTVVDSK ICHPTEFDFY LCSHAGIQGT SRPAHYHVLW DENNFTADGL QSLTNNLCYT YARCTRSVSI VPPAYYAHLA AFRARFYMEP 1001: ETSDSGSMAS GSMARGGGMA GRSTRGPNVN AAVRPLPALK ENVKRVMFYC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)