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AT1G48130.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.990
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 1-cysteine peroxiredoxin 1
Curator
Summary (TAIR10)
encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.
Computational
Description (TAIR10)
1-cysteine peroxiredoxin 1 (PER1); FUNCTIONS IN: thioredoxin peroxidase activity, antioxidant activity; INVOLVED IN: maintenance of seed dormancy, response to desiccation; LOCATED IN: cellular_component unknown; EXPRESSED IN: embryo, aleurone layer, seed; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Peroxiredoxin, C-terminal (InterPro:IPR019479), Thioredoxin fold (InterPro:IPR012335), Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen (InterPro:IPR000866), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: 2-cysteine peroxiredoxin B (TAIR:AT5G06290.1); Has 11559 Blast hits to 11559 proteins in 2567 species: Archae - 531; Bacteria - 7064; Metazoa - 1157; Fungi - 321; Plants - 349; Viruses - 0; Other Eukaryotes - 2137 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G48130-MONOMEREC:1.11.1.15eggNOG:COG0450eggNOG:KOG0854
EMBL:AC023673EMBL:BT003916EMBL:BT014873EMBL:CP002684
EMBL:Y12089EMBL:Z37278EnsemblPlants:AT1G48130EnsemblPlants:AT1G48130.1
entrez:841231Gene3D:3.40.30.10GeneID:841231Genevisible:O04005
GO:GO:0005634GO:GO:0005737GO:GO:0008379GO:GO:0009269
GO:GO:0010231GO:GO:0098869Gramene:AT1G48130.1hmmpanther:PTHR10681
HOGENOM:HOG000022346InterPro:IPR000866InterPro:IPR012336InterPro:IPR019479
InterPro:IPR024706KEGG:ath:AT1G48130KO:K11188OMA:IDSNPSH
PaxDb:O04005PeroxiBase:4362Pfam:O04005Pfam:PF00578
Pfam:PF10417Pfscan:PS51352PhylomeDB:O04005PIRSF:PIRSF000239
PRIDE:O04005PRO:PR:O04005PROSITE:PS51352ProteinModelPortal:O04005
Proteomes:UP000006548RefSeq:NP_175247.1SMR:O04005STRING:3702.AT1G48130.1
SUPFAM:SSF52833TAIR:AT1G48130tair10-symbols:ATPER1tair10-symbols:PER1
UniGene:At.38476UniProt:O04005
Coordinates (TAIR10) chr1:+:17780610..17781500
Molecular Weight (calculated) 24082.80 Da
IEP (calculated) 6.60
GRAVY (calculated) -0.41
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MPGITLGDTV PNLEVETTHD KFKLHDYFAN SWTVLFSHPG DFTPVCTTEL GAMAKYAHEF DKRGVKLLGL SCDDVQSHKD WIKDIEAFNH GSKVNYPIIA
101: DPNKEIIPQL NMIDPIENGP SRALHIVGPD SKIKLSFLYP STTGRNMDEV LRALDSLLMA SKHNNKIATP VNWKPDQPVV ISPAVSDEEA KKMFPQGFKT
201: ADLPSKKGYL RHTEVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)