AT1G48090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.663 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : calcium-dependent lipid-binding family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
calcium-dependent lipid-binding family protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), Protein of unknown function DUF946 (InterPro:IPR009291), Vacuolar protein sorting-associated protein (InterPro:IPR009543), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973); BEST Arabidopsis thaliana protein match is: pleckstrin homology (PH) domain-containing protein (TAIR:AT4G17140.2); Has 2732 Blast hits to 1481 proteins in 212 species: Archae - 2; Bacteria - 15; Metazoa - 1181; Fungi - 466; Plants - 461; Viruses - 0; Other Eukaryotes - 607 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:17732582..17758194 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 462036.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.40 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.27 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 4146 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MFEAHFDVVI LASMRAAMVA VTGEVLHLLR RYLGEYVHGL STEALRISVW KGDVVLKDLK LKAEALNSLK LPVAVKSGFV GTITLKVPWK SLGKEPVIVL 0101: IDRVFVLAYP APDDRTLKEE DREKLLETKL QQIEEAETAT LEARAKSKLG SPPQGNSWLG SIIATIIGNL KVSISNVHIR YEDSTSNPGH PFAAGITLAK 0201: LAAVTMDEEG NETFDTSGAL DKLRKFKGSS PRGFKYNKNI DWAFKMNSLQ LERLALYHDS NSFPWEIEKQ WDNITPEEWI EMFEDGIKEQ TEHKIKSKWA 0301: LNRHYLLSPI NGSLKYHRLG NQERNNPEIP FERASVILND VNVTITEEQY HDWIKLVEVV SRYKTYIEIS HLRPMVPVSE APRLWWRFAA QASLQQKRLC 0401: YRFSWDSIHH LCQLRRRYIQ LYANFLQQSS DVNYPEMREI EKDLDSKVIL LWRLLAHAKV ESVKSKEAAE QRKLKKGGWF SFNWRTEAED DPEVDSVAGG 0501: SKLMEERLTK DEWKAINKLL SHQPDEEMNL YSGKDMQNMT HFLVTVSIGQ GAARIVDINQ TEVLCGRFEQ LDVTTKFRHR STQCDVSLRF YGLSAPEGSL 0601: AQSVSSERKT NALMASFVNA PIGENIDWRL SATISPCHAT IWTESYDRVL EFVKRSNAVS PTVALETAAV LQMKLEEVTR RAQEQLQIVL EEQSRFALDI 0701: DIDAPKVRIP LRASGSSKCS SHFLLDFGNF TLTTMDTRSE EQRQNLYSRF CISGRDIAAF FTDCGSDNQG CSLVMEDFTN QPILSPILEK ADNVYSLIDR 0801: CGMAVIVDQI KVPHPSYPST RISIQVPNIG VHFSPTRYMR IMQLFDILYG AMKTYSQAPV DHMPDGIQPW SPTDLASDAR ILVWKGIGNS VATWQSCRLV 0901: LSGLYLYTFE SEKSLDYQRY LCMAGRQVFE VPPANIGGSP YCLAVGVRGT DLKKALESSS TWIIEFQGEE KAAWLRGLVQ ATYQASAPLS GDVLGQTSDG 1001: DGDFHEPQTR NMKAADLVIT GALVETKLYL YGKIKNECDE QVEEVLLLKV LASGGKVHLI SSESGLTVRT KLHSLKIKDE LQQQQSGSAQ YLAYSVLKNE 1101: DIQESLGTCD SFDKEMPVGH ADDEDAYTDA LPEFLSPTEP GTPDMDMIQC SMMMDSDEHV GLEDTEGGFH EKDTSQGKSL CDEVFYEVQG GEFSDFVSVV 1201: FLTRSSSSHD YNGIDTQMSI RMSKLEFFCS RPTVVALIGF GFDLSTASYI ENDKDANTLV PEKSDSEKET NDESGRIEGL LGYGKDRVVF YLNMNVDNVT 1301: VFLNKEDGSQ LAMFVQERFV LDIKVHPSSL SVEGTLGNFK LCDKSLDSGN CWSWLCDIRD PGVESLIKFK FSSYSAGDDD YEGYDYSLSG KLSAVRIVFL 1401: YRFVQEVTAY FMGLATPHSE EVIKLVDKVG GFEWLIQKDE MDGATAVKLD LSLDTPIIVV PRDSLSKDYI QLDLGQLEVS NEISWHGCPE KDATAVRVDV 1501: LHAKILGLNM SVGINGSIGK PMIREGQGLD IFVRRSLRDV FKKVPTLSVE VKIDFLHAVM SDKEYDIIVS CTSMNLFEEP KLPPDFRGSS SGPKAKMRLL 1601: ADKVNLNSQM IMSRTVTILA VDINYALLEL RNSVNEESSL AHVALEGLWV SYRMTSLSET DLYVSVPKVS VLDIRPNTKP EMRLMLGSSV DASKQASSES 1701: LPFSLNKGSF KRANSRAVLD FDAPCSTMLL MDYRWRASSQ SCVLRVQQPR ILAVPDFLLA VGEFFVPALR AITGRDETLD PTNDPITRSR GIVLSEPLYK 1801: QTEDVVHLSP RRQLVADSLG IDEYTYDGCG KVISLSEQGE KDLNVGRLEP IIIVGHGKKL RFVNVKIKNG SLLSKCIYLS NDSSCLFSPE DGVDISMLEN 1901: ASSNPENVLS NAHKSSDVSD TCQYDSKSGQ SFTFEAQVVS PEFTFFDGTK SSLDDSSAVE KLLRVKLDFN FMYASKEKDI WVRALLKNLV VETGSGLIIL 2001: DPVDISGGYT SVKEKTNMSL TSTDIYMHLS LSALSLLLNL QSQVTGALQS GNAIPLASCT NFDRIWVSPK ENGPRNNLTI WRPQAPSNYV ILGDCVTSRA 2101: IPPTQAVMAV SNTYGRVRKP IGFNRIGLFS VIQGLEGDNV QHSHNSNECS LWMPVAPVGY TAMGCVANIG SEQPPDHIVY CLSIWRADNV LGAFYAHTST 2201: AAPSKKYSPG LSHCLLWNPL QSKTSSSSDP SSTSGSRSEQ SSDQTGNSSG WDILRSISKA TSYHVSTPNF ERIWWDKGGD LRRPVSIWRP VPRPGFAILG 2301: DSITEGLEPP ALGILFKADD SEIAAKPVQF NKVAHIVGKG FDEVFCWFPV APPGYVSLGC VLSKFDEAPH VDSFCCPRID LVNQANIYEA SVTRSSSSKS 2401: SQLWSIWKVD NQACTFLARS DLKRPPSRMA FAVGESVKPK TQENVNAEIK LRCFSLTLLD GLHGMMTPLF DTTVTNIKLA THGRPEAMNA VLISSIAAST 2501: FNPQLEAWEP LLEPFDGIFK LETYDTALNQ SSKPGKRLRI AATNILNINV SAANLETLGD AVVSWRRQLE LEERAAKMKE ESAASRESGD LSAFSALDED 2601: DFQTIVVENK LGRDIYLKKL EENSDVVVKL CHDENTSVWV PPPRFSNRLN VADSSREARN YMTVQILEAK GLHIIDDGNS HSFFCTLRLV VDSQGAEPQK 2701: LFPQSARTKC VKPSTTIVND LMECTSKWNE LFIFEIPRKG VARLEVEVTN LAAKAGKGEV VGSLSFPVGH GESTLRKVAS VRMLHQSSDA ENISSYTLQR 2801: KNAEDKHDNG CLLISTSYFE KTTIPNTLRN MESKDFVDGD TGFWIGVRPD DSWHSIRSLL PLCIAPKSLQ NDFIAMEVSM RNGRKHATFR CLATVVNDSD 2901: VNLEISISSD QNVSSGVSNH NAVIASRSSY VLPWGCLSKD NEQCLHIRPK VENSHHSYAW GYCIAVSSGC GKDQPFVDQG LLTRQNTIKQ SSRASTFFLR 3001: LNQLEKKDML FCCQPSTGSK PLWLSVGADA SVLHTDLNTP VYDWKISISS PLKLENRLPC PVKFTVWEKT KEGTYLERQH GVVSSRKSAH VYSADIQRPV 3101: YLTLAVHGGW ALEKDPIPVL DISSNDSVSS FWFVHQQSKR RLRVSIERDV GETGAAPKTI RFFVPYWITN DSYLPLSYRV VEIEPSENVE AGSPCLTRAS 3201: KSFKKNPVFS MERRHQKKNV RVLESIEDTS PMPSMLSPQE SAGRSGVVLF PSQKDSYVSP RIGIAVAARD SDSYSPGISL LELEKKERID VKAFCKDASY 3301: YMLSAVLNMT SDRTKVIHLQ PHTLFINRVG VSICLQQCDC QTEEWINPSD PPKLFGWQSS TRLELLKLRV KGYRWSTPFS VFSEGTMRVP VPKEDGTDQL 3401: QLRVQVRSGT KNSRYEVIFR PNSISGPYRI ENRSMFLPIR YRQVEGVSES WQFLPPNAAA SFYWENLGRR HLFELLVDGN DPSNSEKFDI DKIGDYPPRS 3501: ESGPTRPIRV TILKEDKKNI VRISDWMPAI EPTSSISRRL PASSLSELSG NESQQSHLLA SEDSEFHVIV ELAELGISVI DHAPEEILYM SVQNLFVAYS 3601: TGLGSGLSRF KLRMQGIQVD NQLPLAPMPV LFRPQRTGDK ADYILKFSVT LQSNAGLDLR VYPYIDFQGR ENTAFLINIH EPIIWRIHEM IQQANLSRLS 3701: DPNSTAVSVD PFIQIGVLNF SEVRFRVSMA MSPSQRPRGV LGFWSSLMTA LGNTENMPVR ISERFHENIS MRQSTMINNA IRNVKKDLLG QPLQLLSGVD 3801: ILGNASSALG HMSQGIAALS MDKKFIQSRQ RQENKGVEDF GDIIREGGGA LAKGLFRGVT GILTKPLEGA KSSGVEGFVS GFGKGIIGAA AQPVSGVLDL 3901: LSKTTEGANA MRMKIAAAIT SDEQLLRRRL PRAVGADSLL RPYNDYRAQG QVILQLAESG SFLGQVDLFK VRGKFALTDA YESHFILPKG KVLMITHRRV 4001: ILLQQPSNIM GQRKFIPAKD ACSIQWDILW NDLVTMELSD GKKDPPNSPP SRLILYLKAK PHDPKEQFRV VKCIPNSKQA FDVYSAIDQA INLYGQNALK 4101: GMVKNKVTRP YSPISESSWA EGASQQMPAS VTPSSTFGTS PTTSSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)