AT1G47940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT3G18210.2); Has 62 Blast hits to 62 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:17668285..17669713 | ||||||||||||||||||||
| Molecular Weight (calculated) | 31128.90 Da | ||||||||||||||||||||
| IEP (calculated) | 6.31 | ||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||
| Length | 280 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDDDCMKWKS DRRYSLHLLE CGQHSLYCMS HRGNEKAAPE PKVVVTPSNK NNENDIPSPL NIPPPLNNDA SSSKSPTITS VTELACFHES INEGDTVESF 101: KSVISPGVFV SEMPRPRFCV IMISKESNPN CLVNHVEKLG ERVNVTKIQI MRPNSMSKYC SVLDEFGLDS SMLNNLMEVS GSTCAEFVVD CGEDRDREYG 201: DSPTLDVKKR KKSQALAARR KEIFDDSHIP DQAVLRHSAR ATTCSHWANV NLLSTGDEKV AVGILKQEII RAAKSEAEAR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)