AT1G47890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.591 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 7 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 7 (RLP7); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: stem, stamen; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 6 (TAIR:AT1G45616.1); Has 144165 Blast hits to 35486 proteins in 1317 species: Archae - 51; Bacteria - 13451; Metazoa - 35189; Fungi - 1938; Plants - 82186; Viruses - 41; Other Eukaryotes - 11309 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:17643976..17647035 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 113349.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.88 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||
| Length | 1019 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MELYVFFIYV VGKTLHKKIQ NTNLLLLFGK LCFFTNIKVF IFSEKMSFLI RSICFLILIP SFLITFVSAT QHLCHSDQKD ALLDFKNEFG MVDSKSWVNK 0101: SDCCSWDGIT CDAKSGNVIG LDLSSIFLYG QLKSNSSLFK LRHLRDLNLA NNNFNNSPIP AEFDKLTGLE RLDLSQSSLS GQIPINLLQL TKLVSLDLSS 0201: SDFFGDESFH YLSIDKSFLP LLARNLRNLR ELDMSYVKIS SEIPEEFSNI RSLRSLNLNG CNLFGEFPSS ILLIPNLQSI DLGNNPNLRG NLPVFHENNS 0301: LLKLTILYTS FSGAIPDSIS SLKNLTSLTL SVSYFSGKIP FSLGNLSHLS HLSLSSNNLI GEIPSSIGNL NQLTNFYVGG NKLSGNLPAT LSNLTKLNTI 0401: SLSSNQFTGS LPPSISQLSK LKFFFADDNP FIGAILSPLL KIPSLTRIHL SYNQLNDLVG IENIFMLPNL ETFYIYHYNY TKVRPLDLNV FSSLKQLGTL 0501: YISRIPISTT NITSDFPSNL EYLSLRSCNI TDFPEFIRKG RNLQILDLSN NKIKGQVPDW LWRMPTLNSV DLSNNSLSGF HVSVKASPES QLTSVDLSSN 0601: AFQGPLFLPS KSLRYFSGSN NNFTGKIPRS ICGLSSLEIL DLSNNNLNGS LPWCLETLMS SLSDLDLRNN SLSGSLPEIF MNATKLRSLD VSHNRMEGKL 0701: PGSLTGCSSL EVLNVGSNRI NDMFPFELNS LQKLQVLVLH SNKFHGTLHN VDGVWFGFPQ LQIIDVSHND FFGILPSDYF MNWTAMSSKK DNNIEPEYIQ 0801: NPSVYGSSLG YYTSLVLMSK GVSMEMERVL TIYTAIDLSG NQLHGKIPDS IGLLKELRIL NMSSNGFTGH IPSSLANLKN LESLDISQNN ISGEIPPELG 0901: TLSSLAWINV SHNQLVGSIP QGTQFQRQKC SSYEGNPGLN GPSLENVCGH IKESTPTQTE PLETKEEEEE ESFSWIAAGL GFAPGVVFGL AMGYIVVSYK 1001: HQWFMKTFGR SKQQNTRTR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)