AT1G47870.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : winged-helix DNA-binding transcription factor family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of the E2F transcription factors, (cell cycle genes), key components of the cyclin D/retinoblastoma/E2F pathway. AtE2Fc is regulated by a balance between gene expression and ubiquitin-proteasome proteolysis. AtE2Fc might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. E2Fc has been shown to interact with DPB in its nonphosphorylated form; when E2Fc is phosphorylated, the formation of the E2Fc/DPB heterodimer is lost. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ATE2F2; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Transcription factor E2F/dimerisation partner (TDP) (InterPro:IPR003316), E2F Family (InterPro:IPR015633); BEST Arabidopsis thaliana protein match is: E2F transcription factor 1 (TAIR:AT5G22220.3). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:17634937..17637557 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 44362.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.81 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||||||
| Length | 395 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAATSNSGED PTLSYHHRSP FRFELLQSIS SSDPRYSSLT PSSTNRPFSV SQSLPNSQLS PLISPHWDDS YSQITQKVKS RKNHRIQLGS IANMSGGESI 101: DIAKVIVKQE SSPQNVKRVY NKSKGGTKLL KAGKRMANGE VQNGGLNGAS INCRYDSSLG LLTKKFVKLI QEAEDGTLDL NYCAVVLEVQ KRRIYDITNV 201: LEGIGLIEKT TKNHIRWKGA DNLGQKDLGD QISRLKSEVE SMQSEESRLD DLIRERQEAL RSLEEDDYCR RYMFMTEEDI TSLPRFQNQT LLAIKAPTAS 301: YIEVPDPDEM SFPQQYRMVI RSRMGPIDVY LLSKYKGDSA ETSDKLGNES DQKAPVGVDT PSLKIVTSDT DLKADYWFES DAEVSLTDLW SNFNS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)