AT1G47770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Beta-galactosidase related protein | ||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Beta-galactosidase related protein; FUNCTIONS IN: hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: M germinated pollen stage, LP.04 four leaves visible, F mature embryo stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 35 (InterPro:IPR001944); BEST Arabidopsis thaliana protein match is: Beta-galactosidase related protein (TAIR:AT5G35760.1); Has 16 Blast hits to 16 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:17590266..17591261 | ||||||||||||||||
| Molecular Weight (calculated) | 23485.90 Da | ||||||||||||||||
| IEP (calculated) | 6.68 | ||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||
| Length | 205 amino acids | ||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEEFATFFS PLKEERSTPP KTQTTTPLTA MNNPKSQKRL RGLPLEERPD GPADRSRTCY KLRIWALALK NQYKVLYGEF MSSFFTLRSH DEAVEEYPRA 101: IYYQVETIYD TTSRYKLISF DYGNLGHGDT RMVQDLFLCD GGFNKMAHLG GYYGGEIVLH LFKGSYALFA IAVYDHTLVE DFAKPVNMVE SVKASTDFSN 201: LVNFF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)