AT1G47350.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box associated ubiquitination effector family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box associated domain, type 3 (InterPro:IPR013187), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT1G47340.1); Has 838 Blast hits to 807 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 838; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:17358447..17360722 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 61973.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.12 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||
| Length | 528 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MYNKLQNLRH ETRSVEEYAE EFYLLLTFND INDSQTQLVS RLIGELRSQL QNSLSQFDPT TVSEAHRRAA SFEKQMRSAS WNFTNTRPRS LEQQTPPTNI 101: ASREGDEQIK IVTRNTNDEQ GLRRSARTEN GEILSLARKL SPPNPRRHCV RLLETAEFHM KFPPDGMQIY PRNDRRFSCG YASGMMYFYG MRIKEDDYDG 201: VPVLCNPITG HYATLPAIAR FRQAFSFFGY DPIDKQFKVL FMIMAYPCSP DHHKVLKLGS GEMSWRRLKR TLRHEIMSEG ICINGVVYYL GDTSEVLTSF 301: VVVCFDVRYE TFSFLYPGSY CELINYKGKL GLVFYDDYDG DTIKLRLWVL EDEEKNEWSK YAYVLWDDIF LAHYVSVVGV TATGEIVLSM ADYTSKQPFY 401: IFYYNPEMNT LQCVEIRGFG EYHEASGNRS RVCVFVDNVF EKDCSRFYAL ADHVEDINVI DSKLLKSKIY EDTYPNLEDY EQSDHDETSD DEESLRSYNY 501: SYKPYMYAGE EERRKRSRRT RRSTIRRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)