suba logo
AT1G47317.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Encodes a defensin-like (DEFL) family protein.
Computational
Description (TAIR10)
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Defensin-like (DEFL) family protein (TAIR:AT2G21465.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y65VeggNOG:KOG1075EMBL:AC015449EMBL:CP002684
EMBL:EF182840EnsemblPlants:AT1G47317EnsemblPlants:AT1G47317.1entrez:3767374
GeneID:3767374GO:GO:0005576GO:GO:0031640GO:GO:0050832
Gramene:AT1G47317.1HOGENOM:HOG000130025KEGG:ath:AT1G47317OMA:AIRCKTD
PaxDb:Q2V4I2Pfam:Q2V4I2PhylomeDB:Q2V4I2PRO:PR:Q2V4I2
Proteomes:UP000006548RefSeq:NP_001031152.1STRING:3702.AT1G47317.1TAIR:AT1G47317
TMHMM:TMhelixUniGene:At.63181UniProt:Q2V4I2
Coordinates (TAIR10) chr1:+:17347094..17347515
Molecular Weight (calculated) 11632.10 Da
IEP (calculated) 5.51
GRAVY (calculated) 0.11
Length 103 amino acids
Sequence (TAIR10)
(BLAST)
001: MATLKTTIFI IFILYISCTM FVNIFRVQAD ASCLTTKECV VRCSDEDAQC IHGECHCPHL KVDIEPTKAI RCKTDLDCPD PHQCPKYDYY ACLNNGECTC
101: ISV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)