AT1G47270.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.931 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tubby like protein 6 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Member of TLP family | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
tubby like protein 6 (TLP6); FUNCTIONS IN: phosphoric diester hydrolase activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 2 (TAIR:AT2G18280.2). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:17326828..17328564 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 45980.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.30 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||
| Length | 412 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLSLLLPKR SWEISGGADK IRVAMSLKNI VKNKYKAIGR RGRSHIAPEG SSVSSSLSTN EGLNQSIWVD LPPELLLDII QRIESEQSLW PGRRDVVACA 101: SVCKSWREMT KEVVKVPELS GLITFPISLR QPGPRDAPIQ CFIKRERATG IYRLYLGLSP ALSGDKSKLL LSAKRVRRAT GAEFVVSLSG NDFSRSSSNY 201: IGKLRSNFLG TKFTVYENQP PPFNRKLPPS MQVSPWVSSS SSSYNIASIL YELNVLRTRG PRRMQCIMHS IPISAIQEGG KIQSPTEFTN QGKKKKKPLM 301: DFCSGNLGGE SVIKEPLILK NKSPRWHEQL QCWCLNFKGR VTVASVKNFQ LVAAAAEAGK NMNIPEEEQD RVILQFGKIG KDIFTMDYRY PISAFQAFAI 401: CLSSFDTKPV CE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)