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AT1G47270.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.990
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : tubby like protein 6
Curator
Summary (TAIR10)
Member of TLP family
Computational
Description (TAIR10)
tubby like protein 6 (TLP6); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Tubby, C-terminal, conserved site (InterPro:IPR018066), Tubby, C-terminal (InterPro:IPR000007); BEST Arabidopsis thaliana protein match is: tubby like protein 2 (TAIR:AT2G18280.2); Has 947 Blast hits to 938 proteins in 117 species: Archae - 0; Bacteria - 0; Metazoa - 351; Fungi - 19; Plants - 464; Viruses - 0; Other Eukaryotes - 113 (source: NCBI BLink).
Protein Annotations
BioGrid:26355eggNOG:ENOG410XQFTeggNOG:KOG2502EMBL:AC079677
EMBL:AF487268EMBL:AK228930EMBL:CP002684EnsemblPlants:AT1G47270
EnsemblPlants:AT1G47270.1entrez:841130ExpressionAtlas:Q0WPY0Gene3D:3.20.90.10
GeneID:841130Genevisible:Q0WPY0GO:GO:0003700GO:GO:0005929
GO:GO:0006355GO:GO:0009555GO:GO:0035091GO:GO:0061512
hmmpanther:PTHR16517hmmpanther:PTHR16517:SF41HOGENOM:HOG000238161InParanoid:Q0WPY0
InterPro:IPR000007InterPro:IPR001810InterPro:IPR018066InterPro:IPR025659
OMA:QSLWPGRPaxDb:Q0WPY0Pfam:PF00646Pfam:PF01167
Pfam:Q0WPY0PhylomeDB:Q0WPY0PIR:E96513PRIDE:Q0WPY0
PRINTS:PR01573PRO:PR:Q0WPY0PROSITE:PS01200ProteinModelPortal:Q0WPY0
Proteomes:UP000006548RefSeq:NP_175160.2scanprosite:PS01200SMR:Q0WPY0
STRING:3702.AT1G47270.1SUPFAM:SSF54518SUPFAM:SSF81383TAIR:AT1G47270
tair10-symbols:AtTLP6tair10-symbols:TLP6UniGene:At.18294UniProt:Q0WPY0
Coordinates (TAIR10) chr1:+:17326828..17328564
Molecular Weight (calculated) 46067.90 Da
IEP (calculated) 10.30
GRAVY (calculated) -0.28
Length 413 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLSLLLPKR SWEISGGADK ISRVAMSLKN IVKNKYKAIG RRGRSHIAPE GSSVSSSLST NEGLNQSIWV DLPPELLLDI IQRIESEQSL WPGRRDVVAC
101: ASVCKSWREM TKEVVKVPEL SGLITFPISL RQPGPRDAPI QCFIKRERAT GIYRLYLGLS PALSGDKSKL LLSAKRVRRA TGAEFVVSLS GNDFSRSSSN
201: YIGKLRSNFL GTKFTVYENQ PPPFNRKLPP SMQVSPWVSS SSSSYNIASI LYELNVLRTR GPRRMQCIMH SIPISAIQEG GKIQSPTEFT NQGKKKKKPL
301: MDFCSGNLGG ESVIKEPLIL KNKSPRWHEQ LQCWCLNFKG RVTVASVKNF QLVAAAAEAG KNMNIPEEEQ DRVILQFGKI GKDIFTMDYR YPISAFQAFA
401: ICLSSFDTKP VCE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)