AT1G46912.2
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.491 cytosol 0.401 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : F-box associated ubiquitination effector family protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
F-box associated ubiquitination effector family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box associated domain, type 3 (InterPro:IPR013187), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G46840.1). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:17272521..17273629 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 25556.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 9.54 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||
| Length | 220 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPSKEDAMNN QKNDSMDRRK LVRRNSQSSV STYVRETLHI DLIIEIVSRL PLDSIAICRC VSKQWASILQ RPDFAESFLT KSLSRPRLLF TFRSGSKWYY 101: FSSPQPQTFG KNLSVVAKDY SAELWVLDDT KNVKWSKYKF VLPYTASEEV KKSIWATDSG ELVWTLSSPL SHPLYVYYYN LESQSVREVE IKGMKDKVSR 201: DIGNSLVTFT NYVENLMFLQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)