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AT1G46480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : WUSCHEL related homeobox 4
Curator
Summary (TAIR10)
Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. This protein also contains an acidic domain approximately 10 residues upstream of the WUS box. Part of the TDIF-TDR-WOX4 signaling pathway that plays a crucial role in the maintenance of the vascular meristem organization during secondary growth.
Computational
Description (TAIR10)
WUSCHEL related homeobox 4 (WOX4); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 1 (TAIR:AT3G18010.1); Has 537 Blast hits to 535 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 537; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:26338eggNOG:ENOG410IIYKeggNOG:ENOG410YND1EMBL:AC083835
EMBL:AY251396EMBL:BT010692EMBL:BT010974EMBL:CP002684
EnsemblPlants:AT1G46480EnsemblPlants:AT1G46480.1entrez:841113ExpressionAtlas:Q6X7J9
Gene3D:1.10.10.60GeneID:841113GO:GO:0001944GO:GO:0003677
GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0007165
GO:GO:0010067GO:GO:0051301Gramene:AT1G46480.1hmmpanther:PTHR24326
hmmpanther:PTHR24326:SF263HOGENOM:HOG000272700InParanoid:Q6X7J9IntAct:Q6X7J9
InterPro:IPR001356InterPro:IPR009057KEGG:ath:AT1G46480OMA:ENEYKRT
PaxDb:Q6X7J9Pfam:PF00046Pfam:Q6X7J9Pfscan:PS50071
PhylomeDB:Q6X7J9PIR:F96511PRIDE:Q6X7J9PRO:PR:Q6X7J9
PROSITE:PS50071ProteinModelPortal:Q6X7J9Proteomes:UP000006548RefSeq:NP_175145.2
SMART:SM00389SMR:Q6X7J9STRING:3702.AT1G46480.1SUPFAM:SSF46689
TAIR:AT1G46480tair10-symbols:WOX4UniGene:At.38691UniProt:B7U6X4
UniProt:Q6X7J9
Coordinates (TAIR10) chr1:-:17236903..17237953
Molecular Weight (calculated) 28676.80 Da
IEP (calculated) 9.83
GRAVY (calculated) -0.88
Length 251 amino acids
Sequence (TAIR10)
(BLAST)
001: MKVHEFSNGF SSSWDQHDST SSLSLSCKRL RPLAPKLSGS PPSPPSSSSG VTSATFDLKN FIRPDQTGPT KFEHKRDPPH QLETHPGGTR WNPTQEQIGI
101: LEMLYKGGMR TPNAQQIEHI TLQLGKYGKI EGKNVFYWFQ NHKARERQKQ KRNNLISLSC QSSFTTTGVF NPSVTMKTRT SSSLDIMREP MVEKEELVEE
201: NEYKRTCRSW GFENLEIENR RNKNSSTMAT TFNKIIDNVT LELFPLHPEG R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)