AT1G45616.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.996 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : receptor like protein 6 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
receptor like protein 6 (RLP6); INVOLVED IN: signal transduction, defense response; LOCATED IN: membrane; EXPRESSED IN: leaf; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 7 (TAIR:AT1G47890.1); Has 122755 Blast hits to 32280 proteins in 1220 species: Archae - 51; Bacteria - 8781; Metazoa - 27217; Fungi - 1355; Plants - 75532; Viruses - 33; Other Eukaryotes - 9786 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:17183550..17186534 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 110163.00 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.40 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||
| Length | 994 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTGLYSSMSF FLRTIVLLFS TSSFCNTFAS LTQDSCHPDQ RDALLEFKNE FKIWYPNGFL DIDGVLMDVT SYPKTKSWTK NSDCCYWDGI TCDTKSGKVT 101: GLDLSCSCLH GRLEPNSSLF RLQHLQSVNL AYNNFTNSPI PAEFSKFMRL ERLNLSRSSF SGHISIKLLQ LTNLVSLDLS SSFPYSPSSL SIEKPLFLHL 201: LALNFMNLRE LDMSSVDISS AIPIEFSYMW SLRSLTLKGC NLLGRFPNSV LLIPNLESIS LDHNLNLEGS LPNFLRNNSL LKLSIYNTSF SGTIPNSISN 301: LKHLTSLKLQ QSAFSGRIPS SLRSLSHLSN LVLSENNFVG EIPSSVSNLK QLTLFDVSDN NLNGNFPSSL LNLNQLRYID ICSNHFTGFL PPTISQLSNL 401: EFFSACDNSF TGSIPSSLFN ISSLTTLGLS YNQLNDTTNI KNISLLHNLQ RLLLDNNNFK ASQVDLDVFL SLKRLVSLAL SGIPLSTTNI TSDSEFSSHL 501: EYLELSGCNI IEFPEFIRNQ RNLSSIDLSN NNIKGQVPNW LWRLPELSTV DLSNNSLIGF NGSLKALSGS KIVMLDLSSN AFQGPLFMPP RGIQYFLGSY 601: NNFTGYIPPS ICGLANPLIL DLSNNNLHGL IPRCLEAQMS SLSVLNLRNN SLDGSLPNIF MNAKVLSSLD VSHNTLEGKL PASLAGCSAL EILNVESNNI 701: NDTFPFWLNS LPKLQVLVLR SNNFRGTLHN VDGVWFGFPL LRITDVSHND FVGTLPSDYF MNWTAISKSE TELQYIGDPE DYGYYTSLVL MNKGVSMEMQ 801: RILTKYTVID FAGNKIQGKI PESVGILKEL HVLNLSSNAF TGHIPSSLAN LTNLESLDIS QNKIGGEIPP ELGTLSSLEW INVSHNQLVG SIPQGTQFHR 901: QNCSSYEGNP GIYGSSLKDV CGDIHAPRPP QAVLPHSSSS SSEEDELISW IAACLGFAPG MVFGLTMGYI MTSHKHEWFM DTFGRRKGRS TRTR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)