AT1G45215.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF784) | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a ECA1 gametogenesis related family protein | ||||||||||||||||||||||||
| Computational Description (TAIR10) |
LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF784, Arabidopsis thaliana (InterPro:IPR008502); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT1G45221.1); Has 130 Blast hits to 128 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 130; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:17137787..17138134 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 12866.90 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.48 | ||||||||||||||||||||||||
| GRAVY (calculated) | 0.45 | ||||||||||||||||||||||||
| Length | 115 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARLSSHVIA LFIVVALVCA FVPVFSVEEA EAKSLWNTCL VKITPKCALN IIYVVFGNGT LIESCCYYLV QEGKVCHDNL IKYIADRPSL IGRKAQYLKK 101: RDDVWNHCVS ISKTA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)