AT1G44224.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 0.966 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ECA1 gametogenesis related family protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a ECA1 gametogenesis related family protein | ||||||||||||||||||||
| Computational Description (TAIR10) |
ECA1 gametogenesis related family protein; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G50570.1); Has 7891 Blast hits to 2246 proteins in 385 species: Archae - 0; Bacteria - 2651; Metazoa - 2792; Fungi - 510; Plants - 409; Viruses - 97; Other Eukaryotes - 1432 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:16821061..16821756 | ||||||||||||||||||||
| Molecular Weight (calculated) | 25330.40 Da | ||||||||||||||||||||
| IEP (calculated) | 10.00 | ||||||||||||||||||||
| GRAVY (calculated) | -0.03 | ||||||||||||||||||||
| Length | 231 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSFILATTL LMALICFVSL PISTVGLQKK PWPKPSELVA GRHHGKGYSR LGDSKIGWGT SSLSDSKAPL SPPVLLPGFP SIPWLPNIPG IPIIPSLPNI 101: PSLPTIPEIP NIPRIPNIPG LPNIPGLPNL PSIPRIPGLP PLPWVKSEVV SKSAKVENCL TKDGSKTSKK SFSKILSSWE KKDYFTLMDE ECCEIVVNMD 201: KKCNSHVQML FKSPFFVPLL RYSCHIKHTK D |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)