AT1G44180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Peptidase M20/M25/M40 family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Peptidase M20/M25/M40 family protein; FUNCTIONS IN: hydrolase activity, aminoacylase activity; INVOLVED IN: metabolic process, cellular amino acid metabolic process; LOCATED IN: endomembrane system, cytoplasm; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Peptidase M20 (InterPro:IPR002933), N-acyl-L-amino-acid amidohydrolase (InterPro:IPR010159); BEST Arabidopsis thaliana protein match is: Peptidase M20/M25/M40 family protein (TAIR:AT1G44820.1); Has 4667 Blast hits to 4663 proteins in 1414 species: Archae - 143; Bacteria - 3143; Metazoa - 394; Fungi - 232; Plants - 81; Viruses - 2; Other Eukaryotes - 672 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:16808239..16810413 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 48608.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.66 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 435 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVSLLLWTL FLFSFIFSLQ SHSKEEEEDT PITRFQQYLR FNTAHPNPNY TAPISFLLDQ ARSIGLTSRT IEFVPGKPVL LLTWLGSNLN LSSILFNSHL 101: DSVPAESEKW IHPPFSAHRT IDGHIYARGA QDDKCIGVQY LEAIRNLKSR SFSPLRTIHI SYVPEEEIGG FGGMMKFAAS SEFKDLNLGF VMDEGQASPG 201: DEFRVFYAER TPWHLAIRAN GMPGHGAKLY DNSAMENLMK SVELISRFRE SQFDFVKAGK AANSEVISVN PVYLKAGTPS TTGFVMNMQP SEAEVGYDLR 301: LPPMADPVAL KKRIAEEWAP SIRNMTYTLK QQGKLTDHLG RPIMTTTNDT NPWWSIFKQA VEATGGKLAK PEILISTTDS RFIRTLGIPV LGFSPMINTP 401: ILVHDHNEFL KDTVFMKGIG VYESVISALS SFEAA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)