AT1G44030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.980 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; LOCATED IN: chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT1G44020.1); Has 1489 Blast hits to 614 proteins in 24 species: Archae - 0; Bacteria - 2; Metazoa - 6; Fungi - 4; Plants - 1474; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:16724773..16726566 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68071.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.09 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||
| Length | 597 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIQIISMVSS LDLNTQPKPQ SKLMSLITET ISLFNSMNLD SQPEPLRKLV SLSIQKVSHL NSVGSDYEPK PDPEFMYMFY ETFNLEPMPK LISTIDQIYS 101: LFILPDPEPK PKPEMDPEQE SKFISLLSQI YSIFAIKTNA ELELRGGPEE LPKFKSFISL TKQLMSLISS LDLETEPEPE SEFISVVSCI KQIISFAHSI 201: SNSEPDFISS TTEMFRLISS IDLEEEPPMK LAALFQHTLS LLYSMDRDSE LIILIGKIIS VIDRTDSEPE AEWGLEQLIS LSPQTKVKLV QGKFHVTGKI 301: ERTSKEKGRC QPKNKHRLYL ESGEDASHFL CKDCNGEDHV ECEKTPVEVK HLLHPKHSLQ LVLQKSSITQ TRKCFCCDED LKLIFYYCTV CDYAMNIACA 401: EKPPVLFIDH PKWHADTLAL FPRQAFLTCN VCAVADSSSP IYMCPPCDFV VHLKCISLPR VIRISRHQHR ISFTTSFDEG DWSCGVCRKT IDNDYGGYSC 501: IKDGCSYAAH SRCATQKNVW DGIYLEGVPE EIEEEEVEPF VTISKGVIHH FSHQNHHLRL DENEGRVYDE NKICQACIMP IYFGNFFSCM QCDYILQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)