AT1G43630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.653 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF793) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein BYPASS related (InterPro:IPR008511); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF793) (TAIR:AT1G18740.1); Has 204 Blast hits to 201 proteins in 18 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 202; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:16436445..16437686 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47850.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.70 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.39 | ||||||||||||||||||||||||||||
| Length | 413 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLQIPLLYSH HQFLPKVNLS LETNFSYISK MPETEYSFGR SFLSLRRDQA HLMDPTSFSE PMTMEVELDS FQRQVAEKFI DLNASADEAE ILSLEWIGKL 101: LDSFLCCQED FRVIIFNHKP QLLKQPMDRL IEEYFERSVK ALDVCNAIRD GIEQIRQWQK LIEIVISALD TNQRQLGEGE IHRAKKALID LAIGMLDEKD 201: SSNTHRNRSF TRNKDHNQHI GYIRSLSWSV SRSWSASRQL QGIGNNLATP RASDVMATNG LALTVYTMTS ILLFVTWVLV AAIPCQDRGL HVHFYFPRHF 301: QWAVPVMSLH DKIMDESKKR DKKKKGCGLL REINQIERNS RMLSDLIDSD NFSLTDEKCT LEVKERVQEL MNVCEAIKEG LDPFDRKVRD VFHQIVRTRT 401: EALDSLGKLQ NQE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)