AT1G43580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Sphingomyelin synthetase family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Sphingomyelin synthetase family protein; Has 50 Blast hits to 47 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:16410673..16412612 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47122.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.34 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.34 | ||||||||||||||||||||||||||||
| Length | 421 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTKGGLGIAA MSYVVIDYMR YVSPVWHSRL MPVLWSVLAI AVVTRVLFYK HWSKELRAAI PFLGSIVFLL CALLFEALCV RSVTAVLGLD WHRETPPLPD 101: TGQWFLLALN ESLPGTLVEI LRAHIIGLHH FLMLFIMLGF SVVFDSVKAP GLGLGARYIF TMGVGRLLRA ITFVSTILPS ARPWCASARF NNVPSQPHRW 201: AQKYYVPYAN DPAAIRKLLH WDAAYADPGS YIGDYRADWG SMSFLSEFLR PSYSEGSSWF ALLKKAGGGC NDLMYSGHML VAVLTAMAWT EAYGGFSSAM 301: IWLFVAHSAQ REIRERHHYT VDCIVAIYVG ILLWKMTGFI WSAERKTKQT KLEKIQNSLI HAAKDGDIET VRRLVEEIEV SSRVEKQSKV ISNRTMTVFA 401: CATVITTLTI VILALTLTSD G |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)