AT1G42710.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : General transcription factor 2-related zinc finger protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
General transcription factor 2-related zinc finger protein; BEST Arabidopsis thaliana protein match is: TTF-type zinc finger protein with HAT dimerisation domain (TAIR:AT2G06541.1); Has 313 Blast hits to 300 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 83; Fungi - 0; Plants - 230; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:16077592..16078567 | ||||||||||||||||||||
| Molecular Weight (calculated) | 23204.90 Da | ||||||||||||||||||||
| IEP (calculated) | 9.21 | ||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||
| Length | 206 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMSNALRRFD PAWFEKYDGI IKHERLGTHV GKPNSSHNYA IEKCVNLMNQ GQSIVHALFK QDDVMKREYH IPLNTSIDAS RYLLRQGIAF HGHDESEESA 101: NKGNFLELVK YTGEQNDATE QMAVVFRFVD KSGTVKERFI EVVHVKETSS ASVKSAIDDL FAKYGLSLKT VRGQGYDGAS IMKVAKGVAK SFDLLSLLLK 201: IIVVYK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)