AT1G40390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.912 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNAse I-like superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), RNA-directed DNA polymerase (reverse transcriptase), related (InterPro:IPR015706); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT1G43760.1); Has 796 Blast hits to 793 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 796; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:15432576..15434674 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47775.10 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.08 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.34 | ||||||||||||||||||||||||||||
| Length | 426 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLSAVPKQKW IPKSDVKAPI TVTSSSLTVV QAGLSPLSEI PKVAPSISKV SDGGPTSLCV EDIRSTRDQL VDPPFPPPPG WGAMSNKEKK KQLKMNTEAE 101: RRSLWDDITR LSASSPLCNS PWLVVGDFNQ IASVTEHYSL MPSNISLQGL EDLQACMRDS DLVDLPCRGV LYTWSNHQQD NPILRKLDRA IVNGCWLATF 201: PTASAIFDPP SDSDHAACMV ILNNSPPLSK KKSFKYFSFL STHPDFISSI LAAWQKEIAV GSFMFSLGEL LKEAKKACRG LNRRGFSNIQ AQLMSNPSDF 301: LFRAEHVARK NWNFFAAALE SFYKQKSRIK WLKEGDLELL TSYLEEADLI MSKHSTPRST RSFKISRDHS TPRSSRRNHH FTSPLDHEVE CPHLHHLTIT 401: RSNHSTPWSS VFTFIARPLL DLTTLP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)