AT1G37020.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine proteinases superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Ulp1 protease family protein (TAIR:AT5G45570.1); Has 315 Blast hits to 281 proteins in 53 species: Archae - 2; Bacteria - 21; Metazoa - 20; Fungi - 17; Plants - 180; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:14046735..14049742 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70551.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 6.66 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||
| Length | 611 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFNCDLIDK SATCEAGHHE FWNEMDVGTS EGPLFTKLEC VMDISKEWSY EKRLMVESFE KYPWGRFAIE SLVSSVKIID YKKNSYGIHG CVYALWIWIY 101: ESMPGLREIY GFRRATTNGV ALLDWRSSRA RIKFKKFIET EKVAHEEVRH MLPDSLENMY PKWSDLPENQ DMTLDNLIRD IIHNRLRNNA WKHEKNGNES 201: TPIDDERAEL SKRLAAVEND LKALKESHPA DVSINDVTSN NKGDDATFNN DKEDETPNKE LELQLKIKDA TKGKKKKVAI MPKKASKIPK KKMAKVKEMK 301: VSTPKVLKKT MRRDDDYVGD VTEKVVADTL KMACSFEDTF SNPHVQRASE AMAIVLSSIE DQIKNLNDGK STVKRIITDG APSPSIPEHL QPVSDEKLHS 401: LMDWLGLMIL IRKMKNDYNK HYSSDFKTYN WTGYYVNHLN GTSHTDAATN NKWFTNVDHL YGCLFVNENH WVALDFNLKT NRIYVYDSIP TPVEELEMVQ 501: QCMFLRKIIP TMLSEYILEK DHKKSYAMLE VKRVTKKNPV NDDRGDCAIY AIKYIECLAL GKSFDGLCDR NMQALWINLG VEMFDELGEF VGTLNCETRQ 601: KEFEIPRLND S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)