AT1G36970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.731 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Domain of unknown function (DUF1985) | ||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1985 (InterPro:IPR015410); BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF1985) (TAIR:AT1G31150.1); Has 123 Blast hits to 120 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 119; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:14016385..14018356 | ||||||||||||||||||||
| Molecular Weight (calculated) | 49709.10 Da | ||||||||||||||||||||
| IEP (calculated) | 5.80 | ||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||
| Length | 439 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTGAVEDDII DNDTRLPPRL FATDRYPDAR LNIYSRPDIL TVICDVLKGT KEVETILDSC FGSLFSLRVS ECSISCKLVH ALLCRQLVTK QKYELKMIFG 101: GQPLRFSLVE FGYLTGLPCG EFPKEYDPDF FPKRRKGKFE LFDDDEAEDN DDEAEDIKLW VNSLLSSVKH EFAESVKKLR SQNLNLLKKI KALKSVKLPK 201: FRYHKISRSR QSTSPPFKKV RLALNHHTSS ESPVNPVVYS PNITTPPSEP LTSLHEGDNV LSDSVHDGDF AVSGDSDKIV DDLSWRELKT HKTNKDSVDS 301: PQNYLNETPS MFIPKFISAN STEVPTSHQP IYDTESKTRD EHMPSPQPPA VYDTATKPSS IDVSEVFLPK GFYYYFKFLI MDVTHTLMLY LFYLNKEIKI 401: QDLSLAENVD TLVHSVCKNI SASIAALSEV GKESLAMIE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)