AT1G35860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.970 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : translocon outer membrane complex 75-I | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
TOC75 pseudogene due to a 5.4-kb gypsy/Ty3-related retrotransposon inserted at the 5' end of the gene | ||||||||||||||||||||||||
| Computational Description (TAIR10) |
translocon outer membrane complex 75-I (TOC75-I); LOCATED IN: outer membrane; CONTAINS InterPro DOMAIN/s: Bacterial surface antigen (D15) (InterPro:IPR000184); BEST Arabidopsis thaliana protein match is: translocon at the outer envelope membrane of chloroplasts 75-III (TAIR:AT3G46740.1); Has 497 Blast hits to 421 proteins in 90 species: Archae - 0; Bacteria - 217; Metazoa - 0; Fungi - 0; Plants - 162; Viruses - 0; Other Eukaryotes - 118 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:13332047..13334050 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 43552.80 Da | ||||||||||||||||||||||||
| IEP (calculated) | 8.76 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||
| Length | 399 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MIEYLGSQEK EYKQRIEKAR PSRGNAYAKR SRSLSARLLH KVKERVLKWY PDQGYSFANV VSFGNLNSKE LIFEVMEGDI TQLVIQFQDK LGNVAEGHVL 101: NIKVVHEAVR NIHSLGLFSN IEIMPIPNEK REGGVIVEVK LQETDQKSVE GSADRSIVPD PGGYPSLASS QPSGTISFEH PNIKGLNRSL IGSIATSNFL 201: NPEDDLSFKL EYVHPYLDGV SNPRNRTFKT SIFNSSKLSS VLTGGPGFEE AVAPILMDRA AINVNGSPTT LSGMGIDRVA FLQGNITQDN TKFVNGAIVG 301: ERKIIQVDQC LGDLPGYDAF SLGGPNYVRY TKGELGAARN IVELKVGAEL RVNVKNTQGY AFAEHGNDLG SSKDMKGNPT AAFRREGHGS SYGVGMKLG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)