AT1G35830.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : VQ motif-containing protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT5G65170.1); Has 1167 Blast hits to 1059 proteins in 155 species: Archae - 0; Bacteria - 36; Metazoa - 369; Fungi - 192; Plants - 292; Viruses - 57; Other Eukaryotes - 221 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:13321214..13322122 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 33216.00 Da | ||||||||||||||||||||||||
| IEP (calculated) | 6.76 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||
| Length | 302 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSCNSGSLQ SSSDDHESSS TGAPQDHSSF FLPPFQPPPS SSTYYGDPTT LSSSSSSSAT YLNFVNNLIS DDILNQTHLL PPQPPPPPPP PPPSSSRNPR 101: KRTRASRRAP TTVLTTDTSN FRAMVQEFTG VPASPFSHPF SSTTRRFDIF RSPSDPLTYN PFRPIPQKPL NPSTSSLLNL HHHTTTSMTF PDLPLPQTHQ 201: VSTFQSLLSH QHHHQPTLSS LHDLDSMNLG ALQQNHHPTA DDDNHQLMMR QFSEFDRRTE KPPEIHNNIS SSSSAPIKGS SGTTTTTTTT VDPWICPTDS 301: NN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)