AT1G35730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : pumilio 9 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the Arabidopsis Pumilio (APUM) proteins containing PUF domain (eight repeats of approximately 36 amino acids each). PUF proteins regulate both mRNA stability and translation through sequence-specific binding to the 3' UTR of target mRNA transcripts. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
pumilio 9 (PUM9); FUNCTIONS IN: RNA binding, binding; LOCATED IN: cytoplasm; EXPRESSED IN: flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Pumilio RNA-binding repeat (InterPro:IPR001313), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: pumilio 10 (TAIR:AT1G35750.1); Has 2809 Blast hits to 1683 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 628; Fungi - 837; Plants - 667; Viruses - 0; Other Eukaryotes - 677 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:13227324..13229796 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63254.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.13 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 564 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFGGFNGDF NFRGASDHRP LGSDGFLPSL DTNPFLKNHK SVEALDLCKK LHKMGISCDM SIWTKPEEQF RVDPSEFGAR TLHGSSGFDQ NLTGASQIHD 101: GFRNFSSVRL QNNNFHGVSP SPGEMRLLGR QDSFNLNGFE EMLALKNHRD FLLDQIHEPI KRPPFLRGND ALISSLMFEG NNRVSQTLAA MEASRGFYPE 201: EDSSLLSPFH EKVSGKLGAS YLEDTVLIGQ GSYGKMSPKS NNDLVSMVEI YGSVNLMAKD QIGCRVLQKL VEEGTFHEAK VILLAIIDHV VELSMDPFGN 301: YIVQKLFDVS DEEQRTLIVS VLTSNPRELI RICLNTYGTR VVQKMIETVK TKQQIALVKS GLKPGFLALV KDLNGNHVIQ SCLQTLGPND NEFVLEAATK 401: YCAEIAIHRH GCCVLQCCIS NSVGLQRERL VAEISRNSLH LSQDPFGNYV VQYLIDQQVS AVKLLVQFRM HYAELATQKF SSHVIEKCLR KYPESRAEIV 501: RELLCVPNFE YLLQDPYANY VIQTALSVTK GPVRAKLVAK VYRYGKLHSS PYCKKIFSKT ILKK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)