AT1G35610.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.927 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT3G13760.1); Has 1508 Blast hits to 616 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 0; Plants - 1486; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:13143150..13144988 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 71045.30 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.97 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||
| Length | 612 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGFEDGPRCL MSHPAHPSHN LSVRYRFNFR IGCFTCGGKA AATTPDCLYY YCTTCEVTFH NGCHQRPRRI THPYHLQHPL TLFYRNPETR VISNIIPDAC 101: PGKIEDTSGP EKYEFVDIVP YKSDIIFNKC TWCAKDFKGD WFYRCLICSF CLDLSCAATL PLLTITNPKS HHHSLVFLPR PLLVPCDACG LVDGLEPSYA 201: CFQCNYMVHQ NCIDLPRVIK ITRHPHRLSH TPYCSSLTSS CQICYKEVDI KYGQYSCHLQ DCFYVVHSKC ATHENVWDGK ELEWEIESDE TEDISPFRNL 301: GDGFIKHFCH KHRLKLKNHD GARDTEKQCR ACIYPIVSHQ FYHCKKCNYS LHEVCAGLSR KLDHALHNHT LILSPSPGKF CCSACSREST GFSYICSNKG 401: CQDFVLDVRC ISVLEYFIHR SHEHPIFIST SYNSKDEILC KVCKKRCLGA HLQCTLCEFT MCYSCAIIPD EIHYKFDKHP LTLSCGESAD NTYWCEVCEK 501: QLDPKEWFYT CNKCCITIHL HCIFGSSVFM KPGSIFRDYY GKVQVFRNNS NTRQLCYMCH NRCTGLIFYE GYRRNATYYY NHSNRSTHRM IFCSLECEIL 601: GMRKRRLIRL PR |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)