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AT1G35467.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RALF-like 5
Curator
Summary (TAIR10)
Rapid alkalinization factor (RALF) family protein. Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
Computational
Description (TAIR10)
RALF-like 5 (RALFL5); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALF-like 29 (TAIR:AT4G11653.1); Has 29 Blast hits to 29 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC023064EMBL:CP002684EnsemblPlants:AT1G35467EnsemblPlants:AT1G35467.1
entrez:5007769GeneID:5007769GO:GO:0004871GO:GO:0005179
GO:GO:0005622GO:GO:0007267GO:GO:0009506GO:GO:0019722
GO:GO:0048046Gramene:AT1G35467.1hmmpanther:PTHR34270HOGENOM:HOG000015101
InterPro:IPR008801KEGG:ath:AT1G35467OMA:KAQVFMFPaxDb:A8MQI8
Pfam:A8MQI8Pfam:PF05498PhylomeDB:A8MQI8PRIDE:A8MQI8
PRO:PR:A8MQI8Proteomes:UP000006548RefSeq:NP_001077666.1TAIR:AT1G35467
tair10-symbols:RALFL5TMHMM:TMhelixUniGene:At.72222UniProt:A8MQI8
Coordinates (TAIR10) chr1:+:13049164..13049433
Molecular Weight (calculated) 10414.90 Da
IEP (calculated) 9.89
GRAVY (calculated) -0.21
Length 89 amino acids
Sequence (TAIR10)
(BLAST)
1: MLKAQVFMFV TVLVFVCVFI NSNDAKRYIE YPPWQKHPCN PRFPTPDCYK RTPANPYRRG CTCISRCRRD CGGLSTWKKL LDTILKIPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)