AT1G34650.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : homeodomain GLABROUS 10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
homeodomain GLABROUS 10 (HDG10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: anther; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeodomain GLABROUS 9 (TAIR:AT5G17320.1); Has 4341 Blast hits to 4336 proteins in 359 species: Archae - 0; Bacteria - 0; Metazoa - 2723; Fungi - 164; Plants - 1399; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:12693011..12697778 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80062.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.07 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 708 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDSSHNDSSS DEEGIDSNNR RHHSNHQVQR LEAFFHECPH PDDSQRRQLG NELNLKHKQI KFWFQNRRTQ ARIHNEKADN IALRVENMKI RCVNEAMEKA 101: LETVLCPPCG GPHGKEEQLC NLQKLRTKNV ILKTEYERLS SYLTKHGGYS IPSVDALPDL HGPSTYGSTS NNRPASYGSS SNHLPQQSSL LRRPFTRELI 201: NTTPLPKPVL LQHFQQLSQL EKNRMFEIAK NAVAEVMSLI QMEHSMWIKS TIDGRAIIDP GNYKRYFTKN SHLKSRSALQ SHHESSMEVV VVQMDARNLV 301: DMFLNTEKWA RLFPTIVTEA KTIHVLDSMD HPRQTFSRVV YEQLHILSPL VLPREFIILR TCQQMKEDLW LIADVSCYLQ NVEFESTAPI CTKRPSGVLI 401: QALPHGRSKV TWIEHVEVTD KVWPHQLYRD LLYGGFGYGA RRWTATLQRM CERLSLYSMT DFPPTDYPGV VKTIEGRRSV MSLGERMLKN FAWIMKMSDK 501: LDLPQQSGAN NSGVRISVRT NTEAGQPPGL IVCAGSSLSL PLPPLQVYDF LRNLEVRHQW DVHCQGNPVT EAARFVTGPD QKNNVTFLQP SSVGEYKLMI 601: LQDGFIDALG GMVVYAPMNL NTAYSAISGQ VDPSTIPILP SGFIISRDSH PSSSEVDGGS MTLLTLAFQI FVTGPSYYTD LNLKDSATTV NTLVSSAVQR 701: IKAMLNCE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)