AT1G34480.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DC1 (InterPro:IPR004146), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, B-box (InterPro:IPR000315), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: zinc ion binding (TAIR:AT3G21210.1); Has 1321 Blast hits to 641 proteins in 42 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 0; Plants - 1256; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:12607276..12609084 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70978.80 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.81 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||
| Length | 602 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDPLKIENAA NITVCRLRHD FDQKEDFRSE HFKDSPVLVL YPLDERKVLR STHTSSSHPL VWCNNGENKD KYCKRESRCR VCSYLLDDDI GYYFLREDLG 101: QKERIFFHKE CIEPITNNPY HRKHPLQVLV SDYLKLNTIC YCCCRRKELN FYCSICNFCI CANCEAKPPL LTIDHKKRHE HMLSYFPREA SITCNVCALD 201: ERRYFLYICH QCDFVVHKEC IYSPCIIKIS RHQHRLSFAS SFLPRKWFCG VCRKKVDENY GGYSCVKGCY YVSHSRCALH KDVWDGKELE EEPDEIYKDI 301: LPFKEIAGGI IQHFSHKHQM RLHKYIDKKI EDNKHCQACA LPVYNCDIFS CMECEFILHT VCANLSLQKE HVIHPHALFL QVGHMFSCSA CQRQSNSFTY 401: MCLMTNCNFR LDVICASTSE PLNHHFHPHL LFLPSDFGST RICSICKVRS QTRFDCGKCD FVLCFYCATI PMKFRYKHDE HLLTFSYEQD ASSEHWCDVC 501: ERKIYLKNGI YMCSECDITL HIQCLLGKEM YMLPGKEMII YGGEEKDILR SNRLTRYICK KCNKRCQNGI VYKNSDETIC CSMECLYQMF SSYIFNKRSI 601: TL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)