AT1G34360.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : translation initiation factor 3 (IF-3) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
translation initiation factor 3 (IF-3) family protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Translation initiation factor 3, N-terminal (InterPro:IPR019814), Translation initiation factor 3, C-terminal (InterPro:IPR019815), Translation initiation factor 3 (InterPro:IPR001288); BEST Arabidopsis thaliana protein match is: Translation initiation factor 3 protein (TAIR:AT2G24060.1); Has 45300 Blast hits to 30219 proteins in 3054 species: Archae - 48; Bacteria - 10638; Metazoa - 13046; Fungi - 7368; Plants - 4879; Viruses - 1090; Other Eukaryotes - 8231 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:12542986..12546025 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 58585.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.41 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.04 | ||||||||||||||||||||||||||||||||||||
| Length | 520 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAIWRIINRS YLKYASNQLT RNYYTQVCLA SSTHVVKQTT KLSSFDIPNS DICTRPSNIF QNLRFLATSA QTRKKEAEVD SDGPRLNEKI TGDYVRLVSE 101: EGHCVVSLRE ALRRAKELQC DLVEVQRDAK PPVCKIVKYS LELYKKAKVG KERAKAKRAE AIRPDIKEIR FTPKIEAKDL KFKSDQALKL MESGYRVKCL 201: AVPDKDKHKE LEPEKLLELL FRFTCFIGDA LVESWPEADR KGAVVIVRHA KFGPPKKGGV KLMKDIDIKS ARVKEESPKP DSSKAGVATV DDQEDIEKSE 301: PRFSVEQAQP VKFQNAYAKR EPSSEFSGGR DASRFEPQSP NQHVNPQRPR FSNQAPNQQP TGRFDPQSPN QPPSAPRPQF PNQQPTGRFD PQFPSQPPRP 401: QFPNQAPNQQ STGRFNPQFP NQRPSPPQSR FPDQAPNQQP SGPSPNRHPD RQGPPPRFQN QAPNQQPTGR FEPQPPNPPR APPRPQTRLP NETSNEQPTA 501: PGRSSGPASG YGIFSTPKTK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)