suba logo
AT1G34160.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 0.996
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G21065.1); Has 36841 Blast hits to 13999 proteins in 256 species: Archae - 0; Bacteria - 8; Metazoa - 78; Fungi - 94; Plants - 36058; Viruses - 0; Other Eukaryotes - 603 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC015446EMBL:CP002684
EnsemblPlants:AT1G34160EnsemblPlants:AT1G34160.1entrez:840315GeneID:840315
Genevisible:Q9FX24GO:GO:0008270Gramene:AT1G34160.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF717HOGENOM:HOG000237569InParanoid:Q9FX24InterPro:IPR002885
InterPro:IPR011990InterPro:IPR032867KEGG:ath:AT1G34160OMA:QGTEPNL
PaxDb:Q9FX24Pfam:PF01535Pfam:PF13041Pfam:PF13812
Pfam:PF14432Pfam:Q9FX24Pfscan:PS51375PhylomeDB:Q9FX24
PIR:G86465PRIDE:Q9FX24PRO:PR:Q9FX24PROSITE:PS51375
ProteinModelPortal:Q9FX24Proteomes:UP000006548RefSeq:NP_174678.2SMR:Q9FX24
STRING:3702.AT1G34160.1SUPFAM:SSF48452TAIR:AT1G34160TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.49939UniProt:Q9FX24
Coordinates (TAIR10) chr1:+:12441393..12443225
Molecular Weight (calculated) 65456.40 Da
IEP (calculated) 6.77
GRAVY (calculated) -0.17
Length 581 amino acids
Sequence (TAIR10)
(BLAST)
001: MARVYMETMI QKCVSFSQIK QLQSHFLTAG HFQSSFLRSR LLERCAISPF GDLSFAVQIF RYIPKPLTND WNAIIRGFAG SSHPSLAFSW YRSMLQQSSS
101: SSAICRVDAL TCSFTLKACA RALCSSAMDQ LHCQINRRGL SADSLLCTTL LDAYSKNGDL ISAYKLFDEM PVRDVASWNA LIAGLVSGNR ASEAMELYKR
201: METEGIRRSE VTVVAALGAC SHLGDVKEGE NIFHGYSNDN VIVSNAAIDM YSKCGFVDKA YQVFEQFTGK KSVVTWNTMI TGFAVHGEAH RALEIFDKLE
301: DNGIKPDDVS YLAALTACRH AGLVEYGLSV FNNMACKGVE RNMKHYGCVV DLLSRAGRLR EAHDIICSMS MIPDPVLWQS LLGASEIYSD VEMAEIASRE
401: IKEMGVNNDG DFVLLSNVYA AQGRWKDVGR VRDDMESKQV KKIPGLSYIE AKGTIHEFYN SDKSHEQWRE IYEKIDEIRF KIREDGYVAQ TGLVLHDIGE
501: EEKENALCYH SEKLAVAYGL MMMDGADEES PVRVINNLRI CGDCHVVFKH ISKIYKREII VRDRVRFHRF KDGSCSCRDF W
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)