AT1G34050.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.461 plasma membrane 0.239 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ankyrin repeat family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G54710.1); Has 21592 Blast hits to 11730 proteins in 530 species: Archae - 23; Bacteria - 1311; Metazoa - 12347; Fungi - 1424; Plants - 2545; Viruses - 58; Other Eukaryotes - 3884 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:12393495..12396006 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63848.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.09 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.13 | ||||||||||||||||||||||||||||||||||||
| Length | 573 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMMQEKSHLK SLEKKKMVAP IIDAILANDV STLLALAEGN LSVLRERYHW DSLGGTVLHL ATELGHKEIV EAIIKLCPSL VGVTNLDGDT PLHFAARWGH 101: ATIVAQILAS GYAEFTPVNG RGETAFVVAC RYTNPDVASL ILEETSSITI GEFYATFVLG EYTDIARRML ERFPKLAWNA DGELSTPLHH ACNANNLEIT 201: KMLLEIDESL AERVNKDGFT PLHLAAMKCS IPILKEFSDK APRYFDILTP AKETVFHLAA EHKNILAFYF MAESPDRNNL LHQVDRYGNT VLHTAVMSSC 301: YSVIVSITYE TTIDLSAKNN RGLKAVDLIN VDDEDYSKIS RWLRFDAKQI RSLSDPNHQQ GNKNMGVLSE YKKMQIFETP SKRESKMHAE ALLNARNTIT 401: IVAVLIASVA FTCGINPPGG VYQEGPYKGK STAGRTLAFQ VFSISNNIAL FTSLCIVILL VSIIPYRTRP LKNFLKLTHR ILWVAVASMA LAYVSAASII 501: IPHVEGKRWL FTTVLSISTL MLGGLFAFMT YKVIRHWLKK MTFNPMMIIM SAFTSISIGV DWLAAGSDGY YFY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)