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AT1G33530.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.875
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G71320.1); Has 1456 Blast hits to 1448 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1452; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JV1NeggNOG:ENOG41106BHEMBL:AC051630EMBL:CP002684
EnsemblPlants:AT1G33530EnsemblPlants:AT1G33530.1entrez:840247GeneID:840247
Gramene:AT1G33530.1hmmpanther:PTHR32133hmmpanther:PTHR32133:SF127HOGENOM:HOG000112523
InParanoid:Q9C800InterPro:IPR001810InterPro:IPR017451iPTMnet:Q9C800
KEGG:ath:AT1G33530OMA:HTEKFRTPaxDb:Q9C800Pfam:PF00646
Pfam:Q9C800Pfscan:PS50181PhylomeDB:Q9C800PIR:B86459
PRIDE:Q9C800PRO:PR:Q9C800PROSITE:PS50181ProteinModelPortal:Q9C800
Proteomes:UP000006548RefSeq:NP_174618.1SMART:SM00256SMR:Q9C800
SUPFAM:0039879SUPFAM:SSF81383TAIR:AT1G33530TIGRfam:TIGR01640
TIGRFAMs:TIGR01640UniGene:At.51905UniProt:Q9C800
Coordinates (TAIR10) chr1:+:12159884..12161314
Molecular Weight (calculated) 49958.40 Da
IEP (calculated) 9.69
GRAVY (calculated) -0.25
Length 441 amino acids
Sequence (TAIR10)
(BLAST)
001: MTFSIEKLVD LKRKKWQSKL QNTKKQVLGR CLTNFSRLLS FRKKQETNGK SPRCSKATLA VVVHPTASTT HDDFLRKKQE RSGKSPSCSE TTLAVELPDV
101: LVEEILQRLP VKYLVRLKSI SKGWKSLIES DHLAEKHLRL LEKKYGLKEI KITVERSTSK SICIKFFSRR SGMNAINSDS DDLLRVPGSC NGLVCVYELD
201: SVYIYLLNPM TGVTRTLTPP RGTKLSVGFG IDVVTGTYKV MVLYGFDRVG TVVFDLDTNK WRQRYKTAGP MPLSCIPTPE RNPVFVNGSL FWLLASDFSE
301: ILVMDLHTEK FRTLSQPNDM DDVDVSSGYI YMWSLEDRLC VSNVRQGLHS YVWVLVQDEL SEKWERTRFN LLGHVFPPLS LNSAWFSQTL VSPYQLSSST
401: CIGSRQRQNS TSALFSRNGD TGAMDAPIEL HISVSTPMMP L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)