AT1G33420.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.899 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/FYVE/PHD zinc finger superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G66170.1); Has 734 Blast hits to 722 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 237; Fungi - 264; Plants - 211; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:12121063..12123346 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78098.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.66 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.31 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 697 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAVMNGGRAT KRARRSNRIS ADLYDFSTFP TAEINGESTT LPPFRDGVRT FLATHARVTF PPSTLFSSLM TWQIMLRPGD STDGSDLSSK LVSLDVVEED 101: VTRSSRSVYC EHCCVVGWSS HPVCRKRYRF IIRSGGDTKA CTRCGNTQNL SEGSNCKWCS MALDIENWVY SQLEDNTHLL HGVIHSNGYA HLLCLNGREG 201: GSGFLTGRAI MDFWDRLCSS LAVRKASVMD VSRKYGMDYR LLHGITRGCS WYSEWGYEFK SGSYALTKEA YQSAVDTLSA IPLSEFLFQG RKPRTQLHSI 301: ISFYQSLSCS ELVTVKDLFS FLLQMIRENS SKPASKSSVL CAWSKSDVER VQQTMVKILK ASGRPQANWV TRWALKRSIC KSASPQLIDY CLKHFGGVLV 401: DDGSRVVSSR CNPGSNDFEY RLESVNNVHR LSNQDVNNAS VEHVKQDLRY LYETLLHPQT MAEFRSRATR EKMIDAATKI LDCKHFIKDY LSSTVNPVAI 501: NLWCCVELSD ELKESPAPPP ERLVLPLNAT VSDLKIEAAK AFQEVYAMFK RFEVEELLGY GSIDDSITLK FLVGTNGVIR IKGRCSKHGL LRYRMERGVD 601: NWKVDCKCGT KDDDGERMLA CDGCGVWHHT RCIGINNADA LPSKFLCFRC IELYSKKPKQ SKKERGSSQV PKAGFVCRGE SAAMGSGSNL SVTLRVG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)